chr1:159709026:C>T Detail (hg38)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr1:159,678,816-159,678,816 View the variant detail on this assembly version. |
| hg38 | chr1:159,709,026-159,709,026 |
HGVS
[No Data.]
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
| JP | HGVD:[No Data.] |
| ToMMo:0.680 | |
| NCBN:[No Data.] | |
| NCBN(Hondo):[No Data.] | |
| NCBN(Ryukyu):[No Data.] | |
| East asia | ExAC:[No Data.] |
Prediction
ClinVar
| Clinical Significance | |
| Review star | [No Data.] |
| Show details | |
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| 0.009 | Carcinoma of lung | We evaluated the role of tumor necrosis factor α (TNFA) rs1799724, interleukin 1... | BeFree | 24139238 | Detail |
| 0.078 | Malignant neoplasm of lung | We evaluated the role of tumor necrosis factor α (TNFA) rs1799724, interleukin 1... | BeFree | 24139238 | Detail |
| <0.001 | Malignant neoplasm of lung | CRP rs2794520 (OR=1.64, 95% CI=1.19-2.26) and IL6 rs1800796 (OR=1.41, 95% CI=1.0... | BeFree | 24139238 | Detail |
| 0.040 | Malignant neoplasm of lung | CRP rs2794520 (OR=1.64, 95% CI=1.19-2.26) and IL6 rs1800796 (OR=1.41, 95% CI=1.0... | BeFree | 24139238 | Detail |
| <0.001 | Carcinoma of lung | CRP rs2794520 (OR=1.64, 95% CI=1.19-2.26) and IL6 rs1800796 (OR=1.41, 95% CI=1.0... | BeFree | 24139238 | Detail |
| 0.011 | Carcinoma of lung | CRP rs2794520 (OR=1.64, 95% CI=1.19-2.26) and IL6 rs1800796 (OR=1.41, 95% CI=1.0... | BeFree | 24139238 | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| We evaluated the role of tumor necrosis factor α (TNFA) rs1799724, interleukin 1β (IL1B) rs16944, IL... | DisGeNET | Detail |
| We evaluated the role of tumor necrosis factor α (TNFA) rs1799724, interleukin 1β (IL1B) rs16944, IL... | DisGeNET | Detail |
| CRP rs2794520 (OR=1.64, 95% CI=1.19-2.26) and IL6 rs1800796 (OR=1.41, 95% CI=1.02-1.96) were associa... | DisGeNET | Detail |
| CRP rs2794520 (OR=1.64, 95% CI=1.19-2.26) and IL6 rs1800796 (OR=1.41, 95% CI=1.02-1.96) were associa... | DisGeNET | Detail |
| CRP rs2794520 (OR=1.64, 95% CI=1.19-2.26) and IL6 rs1800796 (OR=1.41, 95% CI=1.02-1.96) were associa... | DisGeNET | Detail |
| CRP rs2794520 (OR=1.64, 95% CI=1.19-2.26) and IL6 rs1800796 (OR=1.41, 95% CI=1.02-1.96) were associa... | DisGeNET | Detail |
- Gene
- -
- dbSNP
- rs2794520 dbSNP
- Genome
- hg38
- Position
- chr1:159,709,026-159,709,026
- Variant Type
- snv
- Reference Allele
- C
- Alternative Allele
- T
- ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- PASS
- Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- rs2794520
- Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 0.6798
- Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 11394
- Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 16760
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